Title: Soil biodiversity and DNA barcodes: opportunities and challenges
Authors: ORGIAZZI ALBERTODUNBAR MARTHA BONNETPANAGOS PanagiotisDE GROOT Gerard ArjenLEMANCEAU Philippe
Citation: SOIL BIOLOGY & BIOCHEMISTRY vol. 80 p. 244-250
Publisher: PERGAMON-ELSEVIER SCIENCE LTD
Publication Year: 2014
JRC N°: JRC92050
ISSN: 0038-0717
URI: http://www.sciencedirect.com/science/article/pii/S0038071714003617
http://publications.jrc.ec.europa.eu/repository/handle/JRC92050
DOI: 10.1016/j.soilbio.2014.10.014
Type: Articles in periodicals and books
Abstract: Soils encompass a huge diversity of organisms which mostly remains to be characterized due to a number of methodological and logistical issues. Nonetheless, remarkable progress has been made in recent years toward developing strategies to characterize and describe soil biodiversity, especially thanks to the development of molecular approaches relying on direct DNA extraction from the soil matrix. Metabarcoding can be applied to DNA from any environment or organism, and is gaining increasing prominence in biodiversity studies. This approach is already commonly used to characterize soil microbial communities and its application is now being extended to other soil organisms, i.e. meso- and macro-fauna. These developments offer unprecedented scientific and operational opportunities in order to better understand soil biodiversity distribution and dynamics, and to propose tools and strategies for biodiversity diagnosis. However, these opportunities also come with challenges that the scientific community must face. Such challenges are related to i) clarification of terminology, (ii) standardisation of methods and further methodological development for additional taxonomic groups, (iii) development of a common database, and (iv) ways to avoid waste of information and data derived from metabarcoding. In order to facilitate common application of metabarcoding in soil biodiversity assessment, we discuss these opportunities and challenges and propose solutions towards a more homogeneous framework.
JRC Directorate:Sustainable Resources

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